DESCRIPTION

Package: mfishtools
Type: Package
Title: Building Gene Sets and Mapping mFISH Data
Version: 0.0.2
Author: Jeremy Miller <jeremym@alleninstitute.org>
Maintainer: Jeremy Miller <jeremym@alleninstitute.org>
Description: This repository includes code for gene selection for spatial transcriptomics methods and for mapping of spatial transcriptomics (or RNA-Seq data) onto a RNA-Seq reference. Specific topics include:
    1) Correlation-based mapping of cells to reference cell types
    2) Iterative building of gene panels a greedy algorithm with pre-defined constraints
    3) Visualizations related to gene mapping a gene panel selection
License: What license is it under?
Encoding: UTF-8
LazyData: true
Imports:
    dendextend (>= 1.7.0),
    gplots (>= 3.0.1),
    pdist (>= 1.2),
    matrixStats (>= 0.53.1),
    Rtsne (>= 0.13),
    ggplot2 (>= 2.2.1),
    scrattch.vis (>= 0.0),
    dplyr (>= 0.3.4),
    WGCNA (>= 1.0)
RoxygenNote: 7.1.1
Suggests: 
    knitr,
    rmarkdown
VignetteBuilder: knitr