Si provided the following feedback,
When I run the 20210505_PathInformatics-Gallas.Rmd, there is an error on Line 457-- Error: unexpected input in <<. It seems that the code is incomplete. It also happens on Line 478 and the last 5 chunks.
The << input only works when you knit the R markdown file. It doesn't work when you run the code like a script. Let's find a better way to reuse code so that it works when the code is run like a script.
Brandon
Si provided the following feedback,
The
<<input only works when you knit the R markdown file. It doesn't work when you run the code like a script. Let's find a better way to reuse code so that it works when the code is run like a script.Brandon