Problems in __init__.py in KineticLearning

[onedeeper]

In trying to run this notebook, I did the following steps:

1. Cloned the repo
2. Moved the files init.py, helper.py, and plot.py to the same directory as LearnLimoneneDynamics.ipynb
3. Renamed init.py to KineticLearning.py
4. ran read_time_series_data with limonene_data.csv

I ran into some errors and noticed the following:

1. In read_timeseries_data, in the following steps in lines 61-62, the returned object has the Strain level of the index duplicated, which causes a downstream error in the augment_data functions. The following fixes it:

'''
if impute:
df = df.groupby('Strain').apply(lambda group: group.interpolate())
df.index = df.index.droplevel(0) # drops the extra index
'''

[mhgarci1]

Thanks for your feedback!