Cross-Resolution-Dead-Tree-Segmentation/config.json at master · YanCheng-go/Cross-Resolution-Dead-Tree-Segmentation · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
{
    "activation": "default",
    "allow_empty_patches": true,
    "allow_partial_patches": false,
    "append_data": false,
    "apply_count_weights": true,
    "apply_edge_weights": false,
    "area_name": "5c",
    "auto_resample": true,
    "backbone": "resnet50",
    "backbone_warmup": 0,
    "band_sequence": [
        0,
        1,
        2,
        3
    ],
    "batch_size": 8,
    "batch_size_val": 32,
    "blur": false,
    "blur_final": false,
    "checkpoint_per_epoch": 100,
    "config_file": "../config.json",
    "data_date": "20240430",
    "data_dir": "../training_dataset/5c_20240717",
    "dataset_split_by": "areas",
    "edge_threshold_percent": 0.2,
    "edge_threshold_pixel": 3,
    "edge_weight": 10,
    "epochs": 500,
    "evaluate_datasets": "val,test",
    "extract_images_for_areas": false,
    "final_skip": true,
    "fuse_in": false,
    "fuse_interval": 3,
    "fuse_mi": 3,
    "fuse_mx": 11,
    "fuse_out": false,
    "image_srcs": {
        "germany20cm_2022": {
            "base_path": "/mnt/raid5/DL_TreeHealth_Aerial/Germany/Ortho2022_germany",
            "image_file_type": ".tif",
            "image_file_prefix": "",
            "image_file_postfix": "",
            "filelist_path": "/mnt/raid5/DL_TreeHealth_Aerial/Merged/processed_dir/20240405_256_autoSplit_withFin_res_ha_samplerInfo/fp_list_DE.txt"
        },
        "california60cm_2020": {
            "base_path": "/mnt/ssd0/NAIP/intersect_ads2020",
            "image_file_type": ".tif",
            "image_file_prefix": "",
            "image_file_postfix": "",
            "filelist_path": "/mnt/raid5/DL_TreeHealth_Aerial/Merged/processed_dir/20240405_256_autoSplit_withFin_res_ha_samplerInfo/fp_list_CA.txt"
        },
        "swiss20cm_2022": {
            "base_path": "/mnt/raid5/DL_TreeHealth_Aerial/Switzerland/rgbi_norm_clip",
            "image_file_type": ".tif",
            "image_file_prefix": "",
            "image_file_postfix": "",
            "filelist_path": "/mnt/raid5/DL_TreeHealth_Aerial/Merged/processed_dir/20240405_256_autoSplit_withFin_res_ha_samplerInfo/fp_list_CH.txt"
        },
        "spain25cm_2022": {
            "base_path": "/mnt/raid5/DL_TreeHealth_Aerial/Spain_additional/pseudo_NIR_zeros",
            "image_file_type": ".tif",
            "image_file_prefix": "",
            "image_file_postfix": "",
            "filelist_path": "/mnt/raid5/DL_TreeHealth_Aerial/Merged/processed_dir/20240405_256_autoSplit_withFin_res_ha_samplerInfo/fp_list_ES.txt"
        },
        "finland40cm_2021": {
            "base_path": "/mnt/raid5/DL_TreeHealth_Aerial/Finland/images/vnir_epsg32635_40cm",
            "image_file_type": ".jp2",
            "image_file_prefix": "",
            "image_file_postfix": "",
            "filelist_path": "/mnt/raid5/DL_TreeHealth_Aerial/Merged/processed_dir/20240405_256_autoSplit_withFin_res_ha_samplerInfo/fp_list_FI.txt"
        }
    },
    "imgaug_date": "20240430",
    "in_channels": 3,
    "initial_stride": 1,
    "job_name": "nn_train",
    "labeled_areas_file": "labeled_areas_buffered.shp",
    "load": null,
    "log_dir": "../logs_DeLfoRS",
    "log_stdout": true,
    "loss_density_weight": 0.025,
    "loss_energy_weight": 1,
    "loss_function": "tversky46_g2",
    "loss_function_density": "smoothl1",
    "loss_function_energy": "tversky_g2",
    "loss_function_sobel": "smoothl1",
    "loss_sobel_weight": 0.1,
    "lr": 3e-05,
    "lr_scheduler": "none",
    "lr_scheduler_warmup": 1,
    "max_value": 255,
    "merge_mode": "keep_biggest",
    "model_type": "pretrained_with_scalar",
    "model_version": "v0",
    "multi_devices": null,
    "n_classes": 1,
    "n_edge_removal": 0,
    "n_energy_bins": 5,
    "n_grad_accumulation": 1,
    "nir_drop_chance": 0.0,
    "norm": "",
    "norm_type_down": "bn",
    "norm_type_up": "bn",
    "normalize": true,
    "normalize_by_dataset": false,
    "normalize_by_imagenet": true,
    "num_workers": 32,
    "opt_eps": 1e-08,
    "ordinal_connect": true,
    "out_prediction_folder": "predictions",
    "patch_size": 256,
    "pipeline_test": false,
    "pretrained_ckpt": null,
    "processed_dir": "../processed_dir/processed_3bands",
    "project_crs": "EPSG:4326",
    "pyramid_level": 1,
    "rasterize_all_touched": true,
    "reference_source": "germany20cm_2022",
    "report_folder": "reports",
    "rescale": true,
    "reset_head": true,
    "run_dir_suffix": "process",
    "save_idf": true,
    "save_labeled_areas_df": false,
    "save_out_rasters": false,
    "save_patch_df": true,
    "save_samples": true,
    "scaler_weights": null,
    "seed": 42,
    "self_attention": false,
    "sequential_stride": 256,
    "small_object_threshold": null,
    "split_col": "dataset_sp",
    "target_classes": null,
    "target_col": null,
    "target_features_file": "target_features.shp",
    "test_split": 0.1,
    "train_date": "20240430",
    "upsampling": "nearest",
    "use_augmentation": true,
    "val_metric": "loss_energy/val",
    "val_metric_opt": "min",
    "val_split": 0.1,
    "verbose_logging": true,
    "warmup": 0,
    "weighted_sampling": true,
    "year_col": null,
}