vilma make_ld_schema --logfile LD_Matrix_Vilma --out-root /mnt/data/pazb/gwas/Heritability --block-file /mnt/data/pazb/gwas/Heritability/block_file_2021_2023.bed --plink-file-list /mnt/data/pazb/gwas/Heritability/plink_file_list.txt
`Traceback (most recent call last):
File "/usr/local/bin/vilma", line 11, in
load_entry_point('vilma==0.0.16', 'console_scripts', 'vilma')()
File "/usr/local/lib/python3.8/site-packages/vilma-0.0.16-py3.8.egg/vilma/frontend.py", line 74, in main
File "/usr/local/lib/python3.8/site-packages/vilma-0.0.16-py3.8.egg/vilma/make_ld_schema.py", line 173, in main
File "/usr/local/lib/python3.8/site-packages/plinkio/plinkfile.py", line 263, in open
return PlinkFile(path)
File "/usr/local/lib/python3.8/site-packages/plinkio/plinkfile.py", line 15, in init
self.handle = cplinkio.open(path)
OSError: Error while trying to open the BIM plink file.`
i have no clue what could be the problem, someone had this problem before?
vilma make_ld_schema --logfile LD_Matrix_Vilma --out-root /mnt/data/pazb/gwas/Heritability --block-file /mnt/data/pazb/gwas/Heritability/block_file_2021_2023.bed --plink-file-list /mnt/data/pazb/gwas/Heritability/plink_file_list.txt`Traceback (most recent call last):
File "/usr/local/bin/vilma", line 11, in
load_entry_point('vilma==0.0.16', 'console_scripts', 'vilma')()
File "/usr/local/lib/python3.8/site-packages/vilma-0.0.16-py3.8.egg/vilma/frontend.py", line 74, in main
File "/usr/local/lib/python3.8/site-packages/vilma-0.0.16-py3.8.egg/vilma/make_ld_schema.py", line 173, in main
File "/usr/local/lib/python3.8/site-packages/plinkio/plinkfile.py", line 263, in open
return PlinkFile(path)
File "/usr/local/lib/python3.8/site-packages/plinkio/plinkfile.py", line 15, in init
self.handle = cplinkio.open(path)
OSError: Error while trying to open the BIM plink file.`
i have no clue what could be the problem, someone had this problem before?