Skip to content

OSError: Error while trying to open the BIM plink file. #5

Description

@Binyaman

vilma make_ld_schema --logfile LD_Matrix_Vilma --out-root /mnt/data/pazb/gwas/Heritability --block-file /mnt/data/pazb/gwas/Heritability/block_file_2021_2023.bed --plink-file-list /mnt/data/pazb/gwas/Heritability/plink_file_list.txt

`Traceback (most recent call last):
File "/usr/local/bin/vilma", line 11, in
load_entry_point('vilma==0.0.16', 'console_scripts', 'vilma')()
File "/usr/local/lib/python3.8/site-packages/vilma-0.0.16-py3.8.egg/vilma/frontend.py", line 74, in main
File "/usr/local/lib/python3.8/site-packages/vilma-0.0.16-py3.8.egg/vilma/make_ld_schema.py", line 173, in main
File "/usr/local/lib/python3.8/site-packages/plinkio/plinkfile.py", line 263, in open
return PlinkFile(path)
File "/usr/local/lib/python3.8/site-packages/plinkio/plinkfile.py", line 15, in init
self.handle = cplinkio.open(path)

OSError: Error while trying to open the BIM plink file.`

i have no clue what could be the problem, someone had this problem before?

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions