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Source documents are not committed to this repository — neither the original PDFs (data/*.pdf) nor the extracted text the pipeline archives alongside them (data/*.txt). Both are gitignored. We don't have redistribution rights to the source itself, only the right to read and extract from a copy legitimately obtained.

This holds for automatically discovered open-access sources too, and the distinction is worth stating plainly: extracting text changes the format, not the copyright. "Open access" spans everything from CC-BY (redistributable with attribution) through to free-to-read-only (not redistributable), and this pipeline records no per-source license field — sources.json carries title, authors, year, publication, DOI and URL, but nothing about redistribution rights. Publishing the text would need that evidence per source; until it's collected, the text stays local.

Keeping it locally is not incidental — data/<slug>.txt is what the grounding check re-verifies quotes against, so it has to survive after the PDF is deleted.

What is committed, and what actually matters for reproducibility, is the citation: every source a subject draws from is fully described in that subject's own sources.json — title, authors, year, publication, DOI, and URL where available — plus page-level provenance on every individual event and relation (sources[].page; see schema/README.md). That's what lets a reader verify a claim without the PDF needing to sit in this repo.

This file is a quick index of what's been handled, without opening every subject folder.

Sources handled so far

Subject Title Authors Year DOI
suntola A Short History of Atomic Layer Deposition: Tuomo Suntola's Atomic Layer Epitaxy Riikka L. Puurunen 2014 10.1002/cvde.201402012
aleskovskii From V. B. Aleskovskii's "Framework" Hypothesis to the Method of Molecular Layering/Atomic Layer Deposition Anatolii A. Malygin, Victor E. Drozd, Anatolii A. Malkov, Vladimir M. Smirnov 2015 10.1002/cvde.201502013

Add a row here (and the full entry in the subject's sources.json) any time a new source is added, whether found by hand or by a future discovery pipeline.

If you have the PDF locally

scripts/build_site.py --pdf expects it at data/<slug>.pdf (or wherever --pdf points) and records that path in sources.json's file field. That field documents a local convention, not a guarantee the file is present in the repo — re-running extraction, or checking a sources[].page citation against the original, both need your own copy of the PDF; neither needs it to be in git.