Issues

• Higher number of amplicons after amplicon classifier vs amplicon architect.

  AmpliconSuite/AmpliconClassifier#30 · Filter by author judithhariprakash opened on May 19, 2026
  2

• What does Virus amplion necessarily mean?

  AmpliconSuite/AmpliconClassifier#28 · Filter by author jupyter700-ui opened on Mar 5, 2026
  6

• Extrapolating the correct copy number

  AmpliconSuite/AmpliconClassifier#27 · Filter by author AlexUOM opened on Nov 27, 2025
  1

• Why are similar amplicons classified differently?

  AmpliconSuite/AmpliconClassifier#25 · Filter by author DinDenkk opened on Feb 27, 2025
  1

• Quality Scores

  AmpliconSuite/AmpliconClassifier#24 · Filter by author nadiaimam opened on Feb 5, 2025
  3

• Question About BFB Positive and Cyclic Class Amplicons in AmpliconClassifier

  FAQ
  AmpliconSuite/AmpliconClassifier#22 · Filter by author DinDenkk opened on Nov 17, 2024
  1

• what's mean of No amp/Invalid in amplicon_decomposition_class

  AmpliconSuite/AmpliconClassifier#21 · Filter by author aw2222222222 opened on Sep 29, 2024
  2

• inconsistency between the ecDNA counts reported by annotated_cycles and ecDNA_counts.tsv

  AmpliconSuite/AmpliconClassifier#20 · Filter by author newpest opened on Apr 16, 2024
  3

• interpreting the results of AmpliconClassifier

  FAQ
  AmpliconSuite/AmpliconClassifier#18 · Filter by author eesiribloom opened on Nov 23, 2023
  4

• Feature interval bed should include copy number values from AA graph file

  enhancement
  AmpliconSuite/AmpliconClassifier#15 · Filter by author jluebeck opened on Jul 7, 2023

• About the difference between the classfication of the current version and the legacy_natgen_2020

  AmpliconSuite/AmpliconClassifier#14 · Filter by author xieduo7 opened on Jul 3, 2023
  1

• +1 end position in _ampliconx_ecDNA_x_intervals.bed in dir _classification_bed_files

  AmpliconSuite/AmpliconClassifier#13 · Filter by author solo7773 opened on Apr 12, 2023
  5

• Complex - BFB - ecDNA - Differences

  AmpliconSuite/AmpliconClassifier#12 · Filter by author DSchreyer opened on Oct 12, 2022
  1

• Identifying HSRs

  AmpliconSuite/AmpliconClassifier#7 · Filter by author prashanthid opened on Sep 8, 2021
  2

• About 'Complex non-cyclic'

  AmpliconSuite/AmpliconClassifier#4 · Filter by author FromSoSimple opened on Nov 26, 2020
  6