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Processing Streams
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jayd1860 edited this page
Apr 11, 2023
·
5 revisions
Processing Stream User Functions
Typical Processing Streams
Wiki pages
Pages
74
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Home
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Adding auxiliary measurements in the .nirs files
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Adding or Editing stimulus marks
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App Settings
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Changing Group
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Choosing a processing stream config file
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Contributing to Homer3 and its submodules
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Converting Artinis files to .nirs files
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Converting Hitachi files to .nirs files
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Converting NIRx files to .nirs files
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Converting Shimadzu files to .nirs files
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Copying Plots to Figure
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Creating your own processing stream
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Directory structure and data file organization
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Displaying P values
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Download and Installation
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Excluding or Deleting stimulus marks
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Exporting HRF data
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Features of MainGUI
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Getting started with Homer3
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hmrG_SubjAvg
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hmrG_SubjAvgStd
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hmrR_BandpassFilt
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hmrR_BlockAvg
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hmrR_GLM
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hmrR_Intensity2OD
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hmrR_MotionArtifact
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hmrR_MotionArtifactByChannel
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hmrR_MotionCorrectCbsi
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hmrR_MotionCorrectPCA
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hmrR_MotionCorrectPCArecurse
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hmrR_MotionCorrectRLOESS
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hmrR_MotionCorrectSpline
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hmrR_MotionCorrectSplineSG
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hmrR_MotionCorrectWavelet
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hmrR_OD2Conc
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hmrR_PCAFilter
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hmrR_PruneChannels
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hmrR_StimRejection
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hmrR_tCCA
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hmrS_CalcPvalue
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hmrS_RunAvg
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hmrS_RunAvgStd
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Homer
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HOMER3 file formats
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Homer3 User Interfaces
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Input and Output Names and Formats
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Input Files
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Installing and updating Homer3 with Git or GitHub Desktop
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Loading and Editing processing stream
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Loading Dataset and Converting Format
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Manually Excluding Channels
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Manually Excluding Data
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Output Files
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Processing Functions
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Processing Streams
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Rename Conditions
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Reset Dataset
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Running Processing Stream
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Selecting Current Processing
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Setting processing stream parameters
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SNIRF data file format
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Standalone SNIRF loading and saving
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Starting StimEditGUI
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Tutorial Videos (HOMER2)
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Typical processing streams
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User Data Table
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User Function Definitions and the Processing Stream
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Using homer functions offline
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Viewing HRF in Probe Space
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Viewing HRF Standard Error
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Viewing Processed Data
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Viewing Raw Data before Processing
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Working With Datasets using DataTree Library
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Show 59 more pages…
Homer3 Overview
Download and Installation
Homer3 Graphical User Interfaces
Input and Output Definitions
Processing Data
Viewing Processed Data via GUI
Exporting Processed Data into a Text File
Exporting Processed Data into MATLAB WorkSpace
Working with Datasets using DataTree Library
Working with SNIRF files standalone
Custom User Functions
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