This repository contains R scripts for SNP calling and Copy Number Variation (CNV) analysis, developed to evaluate the genomic integrity of human reprogrammed cells (iPSCs).
Developed during MSc M1 internship at CRTI, UMR 1064, Nantes Université (dir. L. David), contributing to work published in Gaignerie et al., Scientific Reports, 2018.
- SNP calling from sequencing data
- CNV detection across reprogrammed vs. parental cells
- Genomic integrity assessment of iPSC lines
- R / Bioconductor
- See script headers for package requirements
Valentin FRANCOIS--CAMPION — GitHub