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3 changes: 3 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -8,11 +8,13 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

### Added
- [``GDI-SOP_github-introduction-for-maintainers.md``](docs/GDI-SOP_github-introduction-for-maintainers.md) - Introductory guide for GDI SOP Repository maintainers.
- [``GDI-SOP0013_fdp-submission-metadata-validation.md``](sops/node-specific/GDI-SOP0013_fdp-submission-metadata-validation.md) - Node-specific SOP template describing how a node FAIR Data Point should validate dataset metadata through save-time validation, local escalation, and a harvestable end state.
- [``GDI-SOP0008_node-helpdesk-ticket-classification.md``](sops/node-specific/GDI-SOP0008_node-helpdesk-ticket-classification.md) - GDI Node Helpdesk Ticket Classification SOP.
- [``GDI-SOP0009_dataset-withdrawal.md``](sops/european-level/GDI-SOP0009_dataset-withdrawal.md) - Withdrawal request GDI SOP.
- [``.gitignore``](.gitignore) - File to ignore certain files in git commits.
- [``GDI-SOP0011_withdraw-dataset-from-node-fair-data-point.md``](sops/node-specific/GDI-SOP0011_withdraw-dataset-from-node-fair-data-point.md) - Node-specific SOP template describing how a node FAIR Data Point should process soft withdrawal of a dataset or linked distributions.


### Modified
- [``GDI-SOP_github-management.md``](docs/GDI-SOP_github-management.md) - Added reference to recorded session
- [``GDI-SOP0003_SOP-1+MG-DAC-Recommendation-Approval.md``](sops/european-level/GDI-SOP0003_SOP-1+MG-DAC-Recommendation-Approval.md) - Updated references to _[Data Governance for Research](https://docs.google.com/document/d/1P_nzGxMXG4CWzqkVbceY2fA3MQ7PEAwW/edit)_ document.
Expand All @@ -23,6 +25,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- [``tests/``](tests/) - Updated ``tests/GDI-SOP0000_sop-template-for-linting.md`` to fit testing standards of the linting script.
- [``GDI-SOP_charter.md``](docs/GDI-SOP_charter.md) - Updated Glossary section with new acronyms and terms from other three SOPs.
- [``GDI-SOP_style-guide.md``](docs/GDI-SOP_style-guide.md) - Added section regarding positioning of tables in MD files.
- [``GDI-SOP_charter.md``](docs/GDI-SOP_charter.md) - Added `DCAT` and `SHACL` to the glossary for SOP0013.
- [``sops/README.md``](sops/README.md) - Added new SOPs to index table.

### Fixed
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5 changes: 5 additions & 0 deletions docs/GDI-SOP_charter.md
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Expand Up @@ -27,10 +27,12 @@ The following table defines the abbreviations and terms relevant to GDI SOPs.
| AE | Associated Entity |
| AI | Action Item |
| AF | Application Form |
| AP | Application Profile |
| API | Application Programming Interface |
| BEN | Beneficiary |
| CC | Carbon Copy (used in communications to send a copy to others) |
| CSC | Finnish IT Center for Science |
| DCAT | Data Catalog Vocabulary |
| DAA | Data Access Agreement |
| DAC | Data Access Committee |
| DMP | Data Management Plan |
Expand All @@ -55,6 +57,8 @@ The following table defines the abbreviations and terms relevant to GDI SOPs.
| GDPR | General Data Protection Regulation |
| GH | GitHub |
| HD | Helpdesk |
| HDM | Harmonised Data Model |
| HealthDCAT-AP | Health Data Catalogue Application Profile |
| HRI | Health Research Infrastructure |
| ID | Identity Document |
| IdP | Identity Provider |
Expand Down Expand Up @@ -83,6 +87,7 @@ The following table defines the abbreviations and terms relevant to GDI SOPs.
| RFC | Request For Comments |
| RI | Research Infrastructure |
| SDPC | Security and Data Protection Committee |
| SHACL | Shapes Constraint Language |
| SLA | Service Level Agreement |
| SP | Submitter Portal |
| SOP | Standard Operating Procedure |
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1 change: 1 addition & 0 deletions sops/README.md
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Expand Up @@ -8,3 +8,4 @@ Below you can find the full list of SOPs in this repository.
| [GDI-SOP0008_node-helpdesk-ticket-classification.md](./node-specific/GDI-SOP0008_node-helpdesk-ticket-classification.md) | GDI-SOP0008 | v1.0.0 | Helpdesk & operations | Node-specific SOP | | | 4 | 2026.03.10 |
| [GDI-SOP0009_dataset-withdrawal.md](./european-level/GDI-SOP0009_dataset-withdrawal.md) | GDI-SOP0009 | v1 | Data & metadata management | European-level SOP | | | 9 | 2026.03.10 |
| [GDI-SOP0011_withdraw-dataset-from-node-fair-data-point.md](./node-specific/GDI-SOP0011_withdraw-dataset-from-node-fair-data-point.md) | GDI-SOP0011 | v1 | Technical infrastructure & software development | Node-specific SOP | | | 5 | 2026.05.20 |
| [GDI-SOP0013_fdp-submission-metadata-validation.md](./node-specific/GDI-SOP0013_fdp-submission-metadata-validation.md) | GDI-SOP0013 | v1 | Data & metadata management | Node-specific SOP | | | 6 | 2026.04.07 |
4 changes: 2 additions & 2 deletions sops/european-level/GDI-SOP0009_dataset-withdrawal.md
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Expand Up @@ -23,7 +23,7 @@
### 1. Document History
| Template Version | Instance version | Author(s) | Description of changes | Date |
|---------|-----------|-----------|------------------------------|------------|
| ``v1.0.1`` | | Marcos Casado Barbero | Address PR review comments | 2026.03.10 |
| ``v1.0.1`` | | Marcos Casado Barbero | Address pull request review comments | 2026.03.10 |
| ``v1`` | | Marcos Casado Barbero | Draft SOP | 2026.01.16 |

### 2. Glossary
Expand Down Expand Up @@ -313,7 +313,7 @@ Request details:
- Deadline requested: <Deadline of withdrawal if applicable>

ACTIONS NEEDED [Within 5 working days]:
1. Please follow through with the dataset withdrawal request as per [Step 5](https://github.com/GenomicDataInfrastructure/standard-operating-procedures/blob/dev/sops/european-level/GDI-SOP0009_dataset-withdrawal.md#85-assign-withdrawal-response-team).
1. Please follow through with the dataset withdrawal request as per [Step 5](https://github.com/GenomicDataInfrastructure/standard-operating-procedures/blob/dev/sops/european-level/GDI-SOP0009_dataset-withdrawal.md#85-assign-withdrawal-response-team).
2. Update the VHD ticket with assigned leads and expected completion timeline.

Once withdrawal is confirmed, the VHD will resume control to verify, notify the requester, and close the ticket.
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