Issues

• Running happy with rtg vcfeval engine does not result with FP.AL 0

  Illumina/hap.py#201 · Filter by author kubranarci opened on May 25, 2025
  2

• Providing a New Docker Image for Easier Deployment

  Illumina/hap.py#199 · Filter by author FFateMoney opened on Apr 28, 2025
  2

• VAF considered by HAPPY sensitivity and specificity

  Illumina/hap.py#198 · Filter by author Belle-AM opened on Mar 5, 2025
  1

• query region doesn't contain variants

  Illumina/hap.py#197 · Filter by author alisamatisse opened on Mar 5, 2025
  1

• Call for the TRUTH_VCF file

  Illumina/hap.py#196 · Filter by author thangnx1012 opened on Mar 3, 2025
  3

• Preoprocess might fail when complex SVs are presented

  Illumina/hap.py#195 · Filter by author LYC-vio opened on Mar 2, 2025

• Misclassification of FP as TP

  Illumina/hap.py#194 · Filter by author sainsachiko opened on Jan 7, 2025

• som.py throws error cannot call vectorize on size 0 inputs unless otypes is set

  Illumina/hap.py#193 · Filter by author marrip opened on Dec 2, 2024

• Persistent Warning Regarding INFO/IMPORT_FAIL in VCF Header

  Illumina/hap.py#192 · Filter by author Iredcg opened on Oct 2, 2024
  2

• Using --usefiltered-truth results in incorrect FP calls for filtered variants in the truth (xcmp)

  Illumina/hap.py#191 · Filter by author melferink opened on Jul 24, 2024

• Make a new pre-built docker image?

  Illumina/hap.py#190 · Filter by author Luobiny opened on Jul 22, 2024

• While using hap.py, there is a problem:

  Illumina/hap.py#189 · Filter by author pioneer-pi opened on Jul 13, 2024
  1

• Can't find reference

  Illumina/hap.py#188 · Filter by author ktruve opened on May 30, 2024
  1

• How is the false positive rate calculated in som.py stats?

  Illumina/hap.py#187 · Filter by author Krannich479 opened on Apr 25, 2024

• Docker build failed

  Illumina/hap.py#186 · Filter by author MAlwaz opened on Apr 22, 2024
  1

• [E::bgzf_uncompress] inflate failed: invalid distance too far back

  Illumina/hap.py#185 · Filter by author liukeweiaway opened on Dec 13, 2023
  1

• Incorrect number of FORMAT/AD values on scmp-distance engine

  Illumina/hap.py#181 · Filter by author jerrywongzy opened on Sep 5, 2023

• Docker fails to build for both bases

  Illumina/hap.py#180 · Filter by author rickymagner opened on Sep 1, 2023

• ROC and PR curve

  Illumina/hap.py#179 · Filter by author ESDeutekom opened on Aug 30, 2023
  2

• Trying to print sequence when we mean contig name

  Illumina/hap.py#176 · Filter by author adamnovak opened on Apr 19, 2023

• VCF format issues with --write-vcf, - FORMAT field inconsistencies

  Illumina/hap.py#175 · Filter by author insilicool opened on Apr 18, 2023
  1

• Integrating vcfdist as a comparison engine into hap.py

  Illumina/hap.py#173 · Filter by author TimD1 opened on Apr 5, 2023

• Error running BCFTOOLS :Argument list too long

  Illumina/hap.py#172 · Filter by author zhaolx01 opened on Mar 16, 2023

• Parsing results VCF gives different counts of TRUTH FN than summary

  Illumina/hap.py#170 · Filter by author BrianLohman opened on Jan 24, 2023
  2

• pre.py -> vcfcheck fails due to call with invalid genotype (non-existent allele)

  Illumina/hap.py#169 · Filter by author robertzeibich opened on Dec 4, 2022