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multitrait changes#531

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bhaller wants to merge 305 commits into
masterfrom
multitrait
Open

multitrait changes#531
bhaller wants to merge 305 commits into
masterfrom
multitrait

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@bhaller

@bhaller bhaller commented Jul 2, 2025

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This branch is the long-term branch for changes to implement multiple phenotypic traits in SLiM; it will likely become SLiM 5.1 or SLiM 6.0. It is is active development, and will often not build; it is not recommended for end users until further notice.

@codecov

codecov Bot commented Dec 21, 2025

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Codecov Report

❌ Patch coverage is 74.24242% with 85 lines in your changes missing coverage. Please review.
✅ Project coverage is 76.82%. Comparing base (4e2be2e) to head (a73466b).

Files with missing lines Patch % Lines
core/haplosome.cpp 63.80% 59 Missing ⚠️
core/community_eidos.cpp 80.39% 10 Missing ⚠️
core/community.cpp 93.24% 5 Missing ⚠️
core/chromosome.h 20.00% 4 Missing ⚠️
core/genomic_element.cpp 50.00% 3 Missing ⚠️
core/haplosome.h 50.00% 2 Missing ⚠️
core/chromosome.cpp 92.85% 1 Missing ⚠️
core/genomic_element_type.cpp 92.30% 1 Missing ⚠️
Additional details and impacted files

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #531      +/-   ##
==========================================
+ Coverage   75.86%   76.82%   +0.96%     
==========================================
  Files         114      118       +4     
  Lines       72808    78617    +5809     
  Branches    12877    14241    +1364     
==========================================
+ Hits        55234    60400    +5166     
- Misses      17574    18217     +643     
Files with missing lines Coverage Δ
core/community.h 100.00% <ø> (ø)
core/genomic_element.h 100.00% <ø> (ø)
core/genomic_element_type.h 100.00% <ø> (ø)
core/individual.cpp 61.13% <ø> (+6.10%) ⬆️
core/individual.h 32.75% <ø> (ø)
core/interaction_type.cpp 80.44% <ø> (+<0.01%) ⬆️
core/interaction_type.h 90.32% <ø> (ø)
core/log_file.cpp 29.52% <ø> (ø)
core/log_file.h 100.00% <ø> (ø)
core/main.cpp 10.97% <ø> (ø)
... and 12 more

... and 70 files with indirect coverage changes

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bhaller and others added 30 commits July 11, 2026 11:05
small update to implementation of mutation storing
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2 participants