Issues

• set node property highest_FDA_approval_status in DrugBank XML ingest

  caution trickyenhancement
  Feature

  RTXteam/RTX-KG2#503 · Filter by author saramsey opened on Feb 27, 2026
  

• migrating to the stitch-proj PyPI package instead of using local_babel.py

  RTXteam/RTX-KG2#499 · Filter by author hodgesf opened on Feb 20, 2026
  3

  

• UMLS:may_treat and UMLS:may_be_treated_by should map to biolink:treats_or_applied_or_studied_to_treat

  verify this fix in next kg2 build
  RTXteam/RTX-KG2#496 · Filter by author saramsey opened on Feb 18, 2026
  1

• Eliminate all edges with biolink:same_as for the predicate

  canonicalizationverify this fix in next kg2 build
  RTXteam/RTX-KG2#493 · Filter by author hodgesf opened on Jan 14, 2026
  

• DrugCentral external references being incorrectly mapped to biolink:same_as

  canonicalizationfix-in-next-buildverify this fix in next kg2 build
  Bug

  RTXteam/RTX-KG2#491 · Filter by author hodgesf opened on Jan 14, 2026
  

• are there URLs for specific RTX-KG2 edges that come from KEGG?

  RTXteam/RTX-KG2#484 · Filter by author saramsey opened on Nov 26, 2025

• Ingest NCT clinical trial record numbers in the clinicaltrialskg_tsv_to_kg_jsonl.py script

  bughigh priority
  Bug

  RTXteam/RTX-KG2#483 · Filter by author saramsey opened on Nov 21, 2025
  1

  

• biolink:in_taxon is being incorrectly remapped to biolink:subclass_of

  verify this fix in next kg2 build
  RTXteam/RTX-KG2#479 · Filter by author saramsey opened on Nov 5, 2025
  1

• Bad identifier: PI3-kinase p110-delta subunit inhibitor

  RTXteam/RTX-KG2#477 · Filter by author dkoslicki opened on Sep 9, 2025
  4

  

• ChEMBL version node pulls from the wrong row of the version table

  RTXteam/RTX-KG2#476 · Filter by author ecwood opened on Aug 20, 2025

• miRBase Version isn't Parsed Right

  good first issue
  RTXteam/RTX-KG2#474 · Filter by author ecwood opened on Aug 19, 2025

• question about dropped edges in the new KG2c build

  RTXteam/RTX-KG2#473 · Filter by author saramsey opened on Aug 18, 2025
  1

• KEGG Extract Shouldn't Finish if No Threads are Run

  RTXteam/RTX-KG2#472 · Filter by author ecwood opened on Aug 18, 2025

• Parameterize Node/Edges Slots

  RTXteam/RTX-KG2#467 · Filter by author ecwood opened on Aug 17, 2025
  1

• Spanish language support

  enhancement
  RTXteam/RTX-KG2#466 · Filter by author saramsey opened on Jul 29, 2025
  2

• Update Snakemake Documentation

  documentation
  RTXteam/RTX-KG2#464 · Filter by author ecwood opened on Jun 30, 2025
  1

  

• Getting more fields from clinical-trials and drug-approvals KP ingests into KG2

  RTXteam/RTX-KG2#463 · Filter by author sundareswarpullela opened on Jun 27, 2025

• Investigating if there are any new and unique predicates provided by DrugApprovals and ClinicalTrials

  RTXteam/RTX-KG2#462 · Filter by author sundareswarpullela opened on Jun 27, 2025
  

• Update Neo4j Version

  RTXteam/RTX-KG2#460 · Filter by author ecwood opened on Jun 23, 2025
  1

• TTD Itself Has Duplicate Nodes

  RTXteam/RTX-KG2#455 · Filter by author ecwood opened on Jun 22, 2025

• TTD Nodes Have the Wrong IDs

  RTXteam/RTX-KG2#454 · Filter by author ecwood opened on Jun 22, 2025
  1

• Duplicate ttd.target node IDs

  RTXteam/RTX-KG2#451 · Filter by author amykglen opened on May 29, 2025
  1

• InformationContentEntity nodes and weird incident edges

  RTXteam/RTX-KG2#449 · Filter by author dkoslicki opened on May 12, 2025
  1

  

• Might want to pull the attributes from the metakg instead of hard coding it

  RTXteam/RTX-KG2#447 · Filter by author dkoslicki opened on May 7, 2025
  1

  

• for JensenLab ingest, use predicatebiolink:occurs_together_in_literature_with

  RTXteam/RTX-KG2#443 · Filter by author saramsey opened on Apr 22, 2025
  1