Discussions

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  Question about parametrizing glycolipids in SIRAH

  lizsuarez002 asked Aug 28, 2025 in Q&A · Unanswered

  

  

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  Question about scaling protein–water interactions in SIRAH 2.0

  shvel asked Jul 9, 2025 in Q&A · Unanswered

  

  

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  Lack of recognition of nanoseconds in secondary structure calculations

  ofelia24ag started May 14, 2025 in General

  

  

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  Regarding cut-off and the PME grid spacing

  shvel asked Apr 11, 2025 in Q&A · Answered

  

  

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  Secondary Structure

  ofelia24ag asked Mar 5, 2025 in Q&A · Answered

  

  

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  Packmol-memgen ensambles with sirah flags -> ERROR: atom selection with index greater than number of atoms in structure 3

  b-lillo started Dec 10, 2024 in General

  

  

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  Mapping from All-Atom to CG-SIRAH

  shvel asked Dec 3, 2024 in Q&A · Answered

  

  

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  Tutorial 3 (Gromacs)

  shvel started Nov 13, 2024 in General

  

  

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  NAMD configuration files not found in sirah_x2.3_24-07.amber

  pedrofischerbioinfo asked Sep 30, 2024 in Q&A · Answered

  

  

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  Error when following the tutorial in Gromacs, example 1

  xih72 asked Aug 16, 2024 in Q&A · Answered

  

  

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  tutorial in Gromacs, example 4

  xih72 asked Aug 18, 2024 in Q&A · Answered

  

  

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  Not Found for https://github.com/SIRAHFF/documentation/releases/download/AMBER/sirah_x2.3_23-11.amber.tar.gz

  xih72 asked Aug 21, 2024 in Q&A · Answered

  

  

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