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1003 Add ode seir metapop bindings#1554

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charlie0614 wants to merge 112 commits intomainfrom
1003-ode-seir-metapop-add-bindings
Draft

1003 Add ode seir metapop bindings#1554
charlie0614 wants to merge 112 commits intomainfrom
1003-ode-seir-metapop-add-bindings

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Changes and Information

Please briefly list the changes (main added features, changed items, or corrected bugs) made:

  • Add the python bindings for the ODE metapopulation model with implicit mobility

Merge Request - Guideline Checklist

Please check our git workflow. Use the draft feature if the Pull Request is not yet ready to review.

Checks by code author

  • Every addressed issue is linked (use the "Closes #ISSUE" keyword below).
  • New code adheres to coding guidelines.
  • No large data files have been added (files should in sum not exceed 100 KB, avoid PDFs, Word docs, etc.).
  • Tests are added for new functionality and a local test run was successful (with and without OpenMP).
  • Appropriate documentation within the code (Doxygen) for new functionality has been added in the code.
  • Appropriate external documentation (ReadTheDocs) for new functionality has been added to the online documentation and checked in the preview.
  • Proper attention to licenses, especially no new third-party software with conflicting license has been added.
  • (For ABM development) Checked benchmark results and ran and posted a local test above from before and after development to ensure performance is monitored.

Checks by code reviewer(s)

  • Corresponding issue(s) is/are linked and addressed.
  • Code is clean of development artifacts (no deactivated or commented code lines, no debugging printouts, etc.).
  • Appropriate unit tests have been added, CI passes, code coverage and performance is acceptable (did not decrease).
  • No large data files added in the whole history of commits(files should in sum not exceed 100 KB, avoid PDFs, Word docs, etc.).
  • On merge, add 2-5 lines with the changes (main added features, changed items, or corrected bugs) to the merge-commit-message. This can be taken from the briefly-list-the-changes above (best case) or the separate commit messages (worst case).

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3 participants