tspyro is a Pyro-based method for inferring posterior distributions on the geographic location and age of ancestral nodes in a tree sequence. tspyro can operate on any valid tree sequence in the tskit format, including those simulated with SLiM (possibly using Slendr) or msprime, or inferred by tsinfer.
tspyro is not yet available via PyPI or conda, so to install tspyro please clone this repo.
The required Python packages can be installed with:
pip3 install -r requirements.txt