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pyCERR (pronounced 'pySir'), an open-source and GNU GPL copyrighted software, stands for A Python-based Computational Environment for Radiological Research. pyCERR provides a platform for organizing imaging metadata and various modules for radiological image analysis. These include CT, MR, PT image and RT dosimetry features, AI modeling workflows, visualization and data transformations.

Installing

pip install git+https://github.com/cerr/pyCERR/

For visualization install the Napari Viewer. Note: this requires Python version >= 3.8.

pip install "pyCERR[napari] @ git+https://github.com/cerr/pyCERR"

Uninstalling

pip uninstall -y pycerr

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Documentation

• pyCERR modules

Community/Support

• CERR Google group

Example use-cases

• Jupyter Notebooks

Tutorials

• Dataclasses
• Data Import and Export
• Coordinate system
• Viewer
• Dose
• Scan
• Structure
• Beam
• Deform
• IBSI1 Radiomics
• IBSI2 Radiomics
• DVH: Dose Volume Histogram
• ROE: Radiotherapy Outcomes Estimator
• Building AI Models with CERR
• Unit Testing