EBI Gene Expression Group
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anatomogram
anatomogram PublicAnatomogram illustrating Expression Atlas experiments
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r-seurat-scripts
r-seurat-scripts PublicScripts to install as a Bioconda package for making workflows
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container-galaxy-sc-tertiary
container-galaxy-sc-tertiary PublicGalaxy container for single cell RNA-Seq tertiary analysis tools
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scxa-workflows
scxa-workflows PublicHigher level repo for aggregating all of Atlas workflow logic for Single Cell
Repositories
- atlas-k8s-ci-environment Public
Collection of Kubernetes manifests for CI of Expression Atlas web applications
ebi-gene-expression-group/atlas-k8s-ci-environment’s past year of commit activity - bulk-recalculations Public
Snakemake workflow for new experiments processing, reprocessing and recalculations steps
ebi-gene-expression-group/bulk-recalculations’s past year of commit activity - atlas-conda Public
Internal conda recipes relevant for atlas but not of general interest to be in bioconda
ebi-gene-expression-group/atlas-conda’s past year of commit activity - internal-ExpressionAtlas Public
Repository of Expression Atlas internal R package used for internal atlas processing.
ebi-gene-expression-group/internal-ExpressionAtlas’s past year of commit activity - doi-gene-mining-pipeline Public
ebi-gene-expression-group/doi-gene-mining-pipeline’s past year of commit activity
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