Retain ROCS scores after temporary cleanup errors - #11
Draft
fulopjoz wants to merge 1 commit into
Draft
Conversation
Allow RDKit and CDPKit scorer temporary directories to tolerate network-filesystem cleanup failures that occur after scoring has completed.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
What changed
Root cause
On networked scratch filesystems, a lingering reader handle can make temporary-directory deletion fail after scoring has completed. Propagating that cleanup exception discards valid score arrays even though the scientific computation succeeded.
Compatibility
Scoring, conformer generation, and returned values are unchanged. Only cleanup failures are suppressed; the operating system or job scratch policy can reap the remaining temporary path.
Validation