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1. AllenInstitute/mfishtools AllenInstitute/mfishtools Public

   Building Gene Sets and Mapping mFISH Data

   HTML 16 9

2. AllenInstitute/GeneOrthology AllenInstitute/GeneOrthology Public

   CSV file and R package for collecting gene ortholog information from NCBI.

   R 18 1

3. AllenInstitute/scrattch AllenInstitute/scrattch Public

   Single cell RNA-seq analysis for transcriptomic type characterization

   HTML 43 5

4. AllenInstitute/AllenInstituteTaxonomy AllenInstitute/AllenInstituteTaxonomy Public

   https://alleninstitutetaxonomy.readthedocs.io/en/latest/schema.html#schema

   R 10 1

5. AllenInstitute/ACE AllenInstitute/ACE Public

   R Shiny app for comparison of annotations (e.g., cell type assignments)

   R 4 1

6. AllenInstitute/CHARGE AllenInstitute/CHARGE Public

   Cell HierARchy Gene Explorer (CHARGE) is an interactive tool for identifying genes of potential biological interest in a cell type taxonomy.

   R 2