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fix: fix build issues with gcc-14 and gcc-15 #92

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Merged
nh13 merged 2 commits into from
Nov 13, 2025
Merged

fix: fix build issues with gcc-14 and gcc-15 #92

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32d079f
fix: fix build issues with gcc-14
nh13 Nov 13, 2025
57fcb96
fix: gcc-15 build issues
nh13 Nov 13, 2025
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12 changes: 6 additions & 6 deletions src/dwgsim.c
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Original file line number Diff line number Diff line change
Expand Up @@ -174,7 +174,7 @@ double ran_normal()
}
}

void unreachable(char *message) {
void unreachable_exit(char *message) {
fprintf(stderr, "\n[dwgsim_core] Error: %s\n", message);
exit(1);
}
Expand Down Expand Up @@ -713,7 +713,7 @@ void dwgsim_core(dwgsim_opt_t * opt)
case 0: strand[0] = (drand48() < 0.5) ? 1 : 0; break;
case 1: strand[0] = 0; break;
case 2: strand[0] = 1; break;
default: unreachable("read strand was not between 0-2");
default: unreachable_exit("read strand was not between 0-2");
}

// set read two's strand
Expand All @@ -723,12 +723,12 @@ void dwgsim_core(dwgsim_opt_t * opt)
case ILLUMINA: strand[1] = 1 - strand[0]; break; // paired end for Illumina (opposite strand)
case SOLID:
case IONTORRENT: strand[1] = strand[0]; break; // mate pair for SOLiD and IonTorrent (same strand)
default: unreachable("data type was not between 0-2");
default: unreachable_exit("data type was not between 0-2");
}
break;
case 1: strand[1] = strand[0]; break; // mate pair (same strand)
case 2: strand[1] = 1 - strand[0]; break; // paired end (opposite strand)
default: unreachable("strandedness was not between 0-2");
default: unreachable_exit("strandedness was not between 0-2");
}

// generate the reads in base space
Expand Down Expand Up @@ -901,7 +901,7 @@ void dwgsim_core(dwgsim_opt_t * opt)
}
qstr[i] = 0;
// BWA
FILE *fpo = (0 == j) ? opt->fp_bwa1: opt->fp_bwa2;
gzFile fpo = (0 == j) ? opt->fp_bwa1: opt->fp_bwa2;
if (NULL != fpo) {
if(ILLUMINA == opt->data_type || IONTORRENT == opt->data_type) {
gzprintf(fpo, "@%s%s%s_%u_%u_%1u_%1u_%1u_%1u_%d:%d:%d_%d:%d:%d_%llx/%d\n",
Expand Down Expand Up @@ -1009,7 +1009,7 @@ void dwgsim_core(dwgsim_opt_t * opt)
}
}
// BWA
FILE *fpo = (0 == j) ? opt->fp_bwa1: opt->fp_bwa2;
gzFile fpo = (0 == j) ? opt->fp_bwa1: opt->fp_bwa2;
if (NULL != fpo) {
if(ILLUMINA == opt->data_type || IONTORRENT == opt->data_type) {
gzprintf(fpo, "@%s%s%s_%u_%u_%1u_%1u_%1u_%1u_%d:%d:%d_%d:%d:%d_%llx/%d\n",
Expand Down
6 changes: 3 additions & 3 deletions src/dwgsim_opt.h
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Expand Up @@ -45,9 +45,9 @@ typedef struct {
char *fn_regions_bed;
FILE *fp_mut;
FILE *fp_vcf;
gzFile *fp_bfast;
gzFile *fp_bwa1;
gzFile *fp_bwa2;
gzFile fp_bfast;
gzFile fp_bwa1;
gzFile fp_bwa2;
FILE *fp_fa;
FILE *fp_fai;
char *read_prefix;
Expand Down
4 changes: 2 additions & 2 deletions src/mut.h
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Expand Up @@ -55,10 +55,10 @@ mutseq_init();
void
mutseq_destroy(mutseq_t *seq);

inline int32_t
int32_t
mut_get_ins_bytes(int32_t n);

inline uint8_t*
uint8_t*
mut_get_ins_long_n(uint8_t *ins, uint32_t *n);

mut_t
Expand Down