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    65 repositories

    • SigBridgeR

      Public
      SigBridgeR: Integrative Framework and Toolkit for Single-Cell Screening of Phenotype-Associated Cells
      packagersingle-cell
      packagersingle-cellphenotype-mapping
      R
      •
      GNU General Public License v3.0
      •1•8•1•0•Updated Jul 18, 2026Jul 18, 2026

    • rpkgkit

      Public
      Streamline R package creation, maintenance, and refactoring. Compatible with and complements `usethis`.
      r-packager-programmingr-package-automation
      r-packager-programmingr-package-automationr-package-developmentpacakge-management
      R
      •
      Other
      •0•2•1•0•Updated Jul 17, 2026Jul 17, 2026

    • paper_SigBridgeR

      Public
      R
      •0•1•0•0•Updated Jul 13, 2026Jul 13, 2026

    • appnet

      Public
      for shiny-portal https://github.com/WangLabCSU/shiny-portal http://biotree.top:38124/
      Shell
      •0•0•0•0•Updated Jul 10, 2026Jul 10, 2026

    • otk

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Jul 1, 2026Jul 1, 2026

    • shiny-portal

      Public
      R
      •0•1•0•0•Updated Jun 26, 2026Jun 26, 2026

    • geokit

      Public
      Tools for Accessing and Working with the Gene Expression Omnibus (GEO)
      R
      •
      Other
      •0•5•0•1•Updated Jun 21, 2026Jun 21, 2026

    • protocol_ggalign

      Public
      Source code and data for the ggalign protocol paper
      R
      •0•2•0•0•Updated Jun 19, 2026Jun 19, 2026

    • courses

      Public
      http://biotree.top:38123/courses/
      SCSS
      •
      Other
      •0•0•1•0•Updated Jun 15, 2026Jun 15, 2026

    • Curated-List

      Public
      A Curated Reading List Maintained by Shixiang and His Team
      learningbioinformaticsdatabase
      learningbioinformaticsdatabaseresourcecancerdev
      Python
      •
      MIT License
      •0•4•0•0•Updated Jun 12, 2026Jun 12, 2026

    • .github

      Public
      0•0•0•0•Updated Jun 10, 2026Jun 10, 2026

    • bioinformatics-god-skill

      Public
      生物信息学之神.skill — 综合50位顶级学者的集体智慧操作系统 | God of Bioinformatics: Collective cognitive OS from 50 top scholars
      MIT License
      •3•0•0•0•Updated May 19, 2026May 19, 2026

    • oxo-flow-venus

      Public
      experimental!!!
      Rust
      •
      Apache License 2.0
      •0•0•0•0•Updated May 19, 2026May 19, 2026

    • oxo-flow-clindet

      Public
      experimental!!!
      R
      •0•0•0•0•Updated May 18, 2026May 18, 2026

    • oxo-flow-circrna

      Public
      experimental!!!
      R
      •
      Other
      •0•1•0•0•Updated May 18, 2026May 18, 2026

    • skills

      Public
      Skills for Real Engineers. Straight from my .claude directory.
      Shell
      •
      MIT License
      •15k•0•0•0•Updated Apr 28, 2026Apr 28, 2026

    • SigBridgeRUtils

      Public
      Some Utilities for SigBridgeR
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 25, 2026Apr 25, 2026

    • ai-rollup

      Public
      Python
      •0•0•0•0•Updated Apr 24, 2026Apr 24, 2026

    • andrej-karpathy-skills

      Public
      A single CLAUDE.md file to improve Claude Code behavior, derived from Andrej Karpathy's observations on LLM coding pitfalls.
      20k•0•0•0•Updated Apr 20, 2026Apr 20, 2026

    • medical-research-skills

      Public
      Hundreds of agent skills for medical research, including protocol design, data analysis, evidence insights, and academic writing.
      Python
      •
      MIT License
      •141•0•0•0•Updated Apr 20, 2026Apr 20, 2026

    • zhuge-perspective-skill

      Public
      诸葛综合思维操作系统 — 融合8位顶尖思维者心智模型的AI Skill
      MIT License
      •0•0•0•0•Updated Apr 13, 2026Apr 13, 2026

    • faers

      Public
      R interface for FDA Adverse Event Reporting System
      r-packageadverse-eventssignal-detection
      r-packageadverse-eventssignal-detectiondrug-safetypharmacovigilancefaersfaers-procedure
      R
      •
      Other
      •9•48•11•0•Updated Apr 10, 2026Apr 10, 2026

    • awesome-persona-skills

      Public
      同事.skill、老板.skill、前任.skill、自己.skill、永生.skill、女娲.skill……
      301•0•0•0•Updated Apr 9, 2026Apr 9, 2026

    • nobel-medicine-minds

      Public
      🏅 Open-source cognitive frameworks of Nobel Medicine laureates (2004-2025), distilled into runnable thinking tools
      Other
      •1•0•0•0•Updated Apr 6, 2026Apr 6, 2026

    • OpenClaw-Medical-Skills

      Public
      The largest open-source medical AI skills library for OpenClaw🦞.
      Python
      •398•0•0•0•Updated Mar 27, 2026Mar 27, 2026

    • offline-communications

      Public
      学生线下交流跟踪系统
      JavaScript
      •4•0•0•1•Updated Mar 20, 2026Mar 20, 2026

    • r4ds

      Public
      R for Data Science 笔记合集网站
      TeX
      •3•5•0•0•Updated Mar 18, 2026Mar 18, 2026

    • blit

      Public
      Execute command line tool from R
      bioinformaticscommand-liner-package
      bioinformaticscommand-liner-package
      R
      •
      GNU General Public License v3.0
      •10•22•6•0•Updated Mar 17, 2026Mar 17, 2026

    • bioinfo-daily-skill

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 11, 2026Mar 11, 2026

    • BLIT-circrna-pipeline

      Public
      An MVP CircRNA pipeline built with BLIT.
      R
      •1•2•0•0•Updated Mar 9, 2026Mar 9, 2026
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