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@pangenome

pangenome

graphical pangenomic methods

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  1. pggb pggb Public

    the pangenome graph builder

    Shell 491 48

  2. impg impg Public

    implicit pangenome graph

    Rust 100 12

  3. odgi odgi Public

    Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

    C++ 241 47

  4. smoothxg smoothxg Public

    linearize and simplify variation graphs using blocked partial order alignment

    C++ 62 9

Repositories

Showing 10 of 84 repositories
  • impg Public

    implicit pangenome graph

    pangenome/impg’s past year of commit activity
    Rust 100 MIT 12 0 4 Updated Apr 21, 2026
  • sweepga Public

    plane sweep filtering genome alignments

    pangenome/sweepga’s past year of commit activity
    Rust 24 MIT 1 1 2 Updated Apr 18, 2026
  • HPRCv2 Public

    pangenome alignment, implicit/explicit graph, and variants for human pangenome project release 2

    pangenome/HPRCv2’s past year of commit activity
    R 21 MIT 1 0 1 Updated Apr 17, 2026
  • MemPanG26 Public Forked from pangenome/MemPanG25

    Computational Pangenomics in Memphis

    pangenome/MemPanG26’s past year of commit activity
    HTML 1 MIT 4 0 0 Updated Apr 16, 2026
  • gfasort Public

    Rust library and CLI for sorting bidirected pangenome graphs using configurable pipelines (path-guided SGD, grooming, topological sort)

    pangenome/gfasort’s past year of commit activity
    Rust 1 MIT 0 0 0 Updated Apr 15, 2026
  • syng Public Forked from richarddurbin/syng

    syncmer graphs, and perhaps other sorts of sequence graphs

    pangenome/syng’s past year of commit activity
    C 0 MIT 5 0 0 Updated Apr 15, 2026
  • seqwish Public

    alignment to variation graph inducer

    pangenome/seqwish’s past year of commit activity
    C++ 158 MIT 21 32 5 Updated Apr 11, 2026
  • impop Public
    pangenome/impop’s past year of commit activity
    Python 6 1 1 0 Updated Apr 9, 2026
  • impg-paper Public

    impg paper

    pangenome/impg-paper’s past year of commit activity
    TeX 0 0 0 0 Updated Apr 7, 2026
  • rs-gfa-utils Public Forked from chfi/rs-gfa-utils
    pangenome/rs-gfa-utils’s past year of commit activity
    Rust 0 1 0 0 Updated Apr 2, 2026
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