Issues

• Support external MSI results from MSIsensor-Pro and MANTIS

  sigven/pcgr#309 · Filter by author ShatalovP opened on Oct 3, 2026
  11

• TypeError in assign_oncogenicity_evidence: int(None) on INTRON_POSITION / EXON_POSITION (v2.3.2)

  sigven/pcgr#308 · Filter by author sirius1018 opened on Sep 7, 2026
  4

• Non-coding germline (CPSR) Pathogenic/Likely Pathogenic variants dropped from PCGR report

  sigven/pcgr#306 · Filter by author sigven opened on Aug 16, 2026

• Bioconda package for PCGR

  sigven/pcgr#283 · Filter by author maxibor opened on Oct 28, 2025
  5

  

• MSI classifier: filter input variant callset by VAF, AD

  sigven/pcgr#282 · Filter by author SeanNesdoly opened on Oct 24, 2025
  2

• Conda: deprecate OSX lockfile

  enhancement
  sigven/pcgr#248 · Filter by author pdiakumis opened on Jul 15, 2024
  

• Parallel instances

  sigven/pcgr#214 · Filter by author gitMakeCoffee opened on May 11, 2023
  4

• Feature: use single conda environment for PCGR

  enhancement
  sigven/pcgr#183 · Filter by author pdiakumis opened on Feb 16, 2022
  

• Request: Cohort analysis

  enhancement
  sigven/pcgr#93 · Filter by author adbeggs opened on Oct 21, 2019
  9

• Mutect2 output vcf FORMAT not accepted

  sigven/pcgr#22 · Filter by author zacshi opened on Apr 26, 2018
  5