🏃 The go-to single-cell Foundation Model

Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data

Cell type pipes for R

Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data

Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clusters of single cells, harmonize labels across single cell datasets to generate a unified atlas and infer relationship among celltypes between two datasets. It uses an ensemble of three machine learning classif…

Supervised cell type identification for scATAC-seq data

Implementation of entropy of mixing algorithm in python

Custom groovy scripts for QuaPath

A single-nucleus RNA-seq reference of the 4-week rat kidney for cell type annotation and label transfer.

scRNA-seq cell type classification benchmark showing that random cell-level splits inflate performance due to donor-level leakage

Modification of the Original ScType Method for Barcode Annotation using KNN Algorithm

Machine Learning Driven Immune Cell Type Classifier

Xenium liver cancer data analysis