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Add num parents to sample group summary #623

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Merged
jeromekelleher merged 1 commit into from
Jul 21, 2026
Merged

Add num parents to sample group summary #623

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7 changes: 6 additions & 1 deletion sc2ts/debug.py
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Original file line number Diff line number Diff line change
Expand Up @@ -842,12 +842,16 @@ def sample_groups_summary(self):
for group_id, nodes in self.sample_group_nodes.items():
samples = []
full_hashes = []
num_parents = []
for u in nodes:
node = self.ts.node(u)
if node.is_sample():
samples.append(u)
full_hashes.append(node.metadata["sc2ts"]["group_id"])
md = self.nodes_metadata[u]["sc2ts"]
num_parents.append(len(md["hmm_match"]["path"]))
full_hashes.append(md["group_id"])
assert len(set(full_hashes)) == 1
assert len(set(num_parents)) == 1
assert full_hashes[0].startswith(group_id)
data.append(
{
Expand All @@ -856,6 +860,7 @@ def sample_groups_summary(self):
"samples": len(samples),
"mutations": len(self.sample_group_mutations[group_id]),
"is_retro": group_id in self.retro_sample_groups,
"num_parents": num_parents.pop(),
}
)
return pd.DataFrame(data).set_index("group_id")
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