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Pull requests: hartwigmedical/hmftools

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Pull requests list

Update README.md
#879 opened Sep 2, 2026 by p-priestley Contributor Loading…
ISOFOX: Fusions changes & improvements for TARS (AUS-418) - #845
#869 opened Aug 12, 2026 by shiv-hartwig Contributor Loading…
Consolidate tool containers with Pixi
#864 opened Aug 3, 2026 by jamesfricker • Draft
Aus463 remapper mate contig fix
#858 opened Jul 22, 2026 by TimLavers Contributor Loading…
@charlesshale
Infra 3073 - Fix redux+sage cram handling where store_nm=0
#856 opened Jul 20, 2026 by mvanniekerkHartwig Contributor Loading…
Fix for SBX YC tag parsing when encountering empty duplex region
#852 opened Jul 16, 2026 by rhassaine Member Loading…
@rhassaine
3
Compar: threshold config (AUS-437)
#851 opened Jul 16, 2026 by DFKoetsier Contributor Loading…
ISOFOX: integrate tars support (AUS-418)
#845 opened Jul 13, 2026 by shiv-hartwig Contributor Loading…
TARS: Transcript Alignment for RNA Splicing (AUS-418)
#839 opened Jul 8, 2026 by shiv-hartwig Contributor Loading…
INFRA-2915 - Add analysis_date config param, make sampling_date optional bug
#813 opened Jun 18, 2026 by rhassaine Member Loading…
@rhassaine
13
Document PEACH resource file location
#810 opened Jun 15, 2026 by jamesfricker Loading…
Opr 324 clinical relevant gene copy number
#806 opened Jun 3, 2026 by LiekeSchoenmaker Contributor Loading…
6
BamTools: BamCompare diff buckets, cigar-tolerant compare, mate-diff columns
#801 opened May 19, 2026 by shiv-hartwig Contributor Loading…
Purple: new germline amp-del based program for building germline even…
#793 opened Apr 29, 2026 by TimLavers Contributor Loading…
Aus 352 findings 3.0.0 backport
#786 opened Apr 3, 2026 by LiekeSchoenmaker Contributor Loading…
Cider: switch gene curation to BWA-MEM, improve output for GRCh37, bug fixes
#747 opened Oct 1, 2025 by reecejones-hartwig Contributor Loading…
6
Add no-release and no-docker options to hmftools-build.py
#692 opened Apr 15, 2025 by brainstorm Loading…
Use multiplatform UMCCR gatk-bwamem-jni instead of org.broadinstitute.hellbender.*
#691 opened Apr 14, 2025 by brainstorm Loading…
2
Bump pillow from 8.2.0 to 10.2.0 in /cuppa/src/main/resources/cuppa-chart dependencies Pull requests that update a dependency file python Pull requests that update Python code
#508 opened Jan 23, 2024 by dependabot Bot Loading…
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